Index

_

__init__() (scrnatools._configs.Config method)

C

cell_type_similarity() (in module scrnatools.tools) check_path() (in module scrnatools._utils) cluster_de() (in module scrnatools.tools)

Config (class in scrnatools._configs) create_cell_type_signature() (in module scrnatools.tools) create_isoform_lookup_tables() (in module scrnatools.tools)

F

fill_array() (in module scrnatools._utils)

filter_cells() (in module scrnatools.qc)

G

gene_density_plot() (in module scrnatools.plotting) gene_embedding() (in module scrnatools.plotting) gene_heatmap() (in module scrnatools.plotting)

gene_violinplot() (in module scrnatools.plotting) get_expression_matrix() (in module scrnatools.tools) get_immgen_similarity_signatures() (in module scrnatools.tools)

I

isoform_preprocessing() (in module scrnatools.tools)

isoform_qc_plot() (in module scrnatools.plotting)

L

load_isoform_lookup_tables() (in module scrnatools.tools)

log_density_ratio() (in module scrnatools.tools)

Q

qc_plotting() (in module scrnatools.plotting)

R

read_kallisto_tcc_matrix() (in module scrnatools.tools)

S

save_isoform_lookup_tables() (in module scrnatools.tools)

scrublet() (in module scrnatools.qc)

T

type_check() (in module scrnatools._utils)