API

Import scrnatools:

import scrnatools as rna

• QC: qc
  • scrnatools.qc.filter_cells
  • scrnatools.qc.scrublet
• Plotting: pl
  • scrnatools.plotting.gene_density_plot
  • scrnatools.plotting.gene_embedding
  • scrnatools.plotting.gene_heatmap
  • scrnatools.plotting.gene_violinplot
  • scrnatools.plotting.isoform_qc_plot
  • scrnatools.plotting.qc_plotting
• Tools: tl
  • scrnatools.tools.cell_type_similarity
  • scrnatools.tools.cluster_de
  • scrnatools.tools.create_cell_type_signature
  • scrnatools.tools.create_isoform_lookup_tables
  • scrnatools.tools.get_expression_matrix
  • scrnatools.tools.get_immgen_similarity_signatures
  • scrnatools.tools.isoform_preprocessing
  • scrnatools.tools.load_isoform_lookup_tables
  • scrnatools.tools.log_density_ratio
  • scrnatools.tools.read_kallisto_tcc_matrix
  • scrnatools.tools.save_isoform_lookup_tables
• Config
  • scrnatools._configs.Config
• Internal: _utils
  • scrnatools._utils.check_path
  • scrnatools._utils.fill_array
  • scrnatools._utils.type_check