scrnatools.tools.read_kallisto_tcc_matrix

scrnatools.tools.read_kallisto_tcc_matrix(sample_path: str) → Tuple[AnnData, DataFrame][source]

Reads in a kallisto bustools isoform matrix.

Parameters:: sample_path (str) – The path to and sample name for the mtx, barcodes, and ec files from kallisto bustools output.
Returns:: An AnnData with the tcc data and the ec matrix.
Return type:: Tuple[AnnData, DataFrame]