scrnatools.tools.get_immgen_similarity_signatures

scrnatools.tools.get_immgen_similarity_signatures(save_path: str = 'datasets') → DataFrame

Creates a csv with the immgen cell populations signature data.

Parameters:

save_path (str, optional) – The path to save the immgen data and signature file to. Defaults to “datasets”.

Raises:

OSError – if wget is not installed on the system

Returns:

A DataFrame containing the immgen cell type expression signatures, with cell types as columns and genes as rows

Return type:

pd.DataFrame