Plotting: pl

scrnatools.plotting.gene_density_plot

Plots the density of expression of genes on an embedding.

scrnatools.plotting.gene_embedding

Creates a UMAP/TSNE plot of a gene's expression from a layer using scanpy.

scrnatools.plotting.gene_heatmap

Plots a heatmap of expression of genes.

scrnatools.plotting.gene_violinplot

Plots violinplot subplots of expression of genes.

scrnatools.plotting.isoform_qc_plot

Plots qc metrics for kallisto isoform data.

scrnatools.plotting.qc_plotting

Creates common preprocessing QC plots for an AnnData object.