Source code for scrnatools.tools._load_isoform_lookup_tables

"""
Loads the lookup tables for an isoform AnnData object.
From scrnatools package

Created on Mon Jan 10 15:57:46 2022

@author: joe germino (joe.germino@ucsf.edu)
"""

# external imports
import json
from typing import Tuple, Dict

# scrnatools package imports
from .._configs import configs

logger = configs.create_logger(__name__.split('_', 1)[1])


# -------------------------------------------------------function----------------------------------------------------- #


def load_isoform_lookup_tables(path: str) -> Tuple[Dict[str, str], Dict[str, str], Dict[str, str]]:
    """Loads the lookup tables for an isoform AnnData object.

    Args:
        path (str): The path and file name of the lookup dicts to load. (_ec2tx.json, _ec2g.json, and _inv_map.json all appended to this file name).

    Returns:
        Tuple[Dict[str, str], Dict[str, str], Dict[str, str]]: The equivalence class to transcript, equivalence class to genes, and inverse map dicts.
    """

    with open(f"{path}_ec2tx.json") as d:
        ec2tx = json.load(d)
    with open(f"{path}_ec2g.json") as d:
        ec2g = json.load(d)
    with open(f"{path}_inv_map.json") as d:
        inv_map = json.load(d)
    return ec2tx, ec2g, inv_map